Package index

All functions

abouheif()

Compute the Abouheif distance matrix

euclidean()

Calculate the Euclidean distance between two distance matrices.

kendall()

Compute the Kendall distance matrix

make_tree()

Generate a Transmission Tree

patristic()

Compute the Patristic distance matrix

shuffle_graph_ids()

Shuffle Node IDs in a Graph

tree_test()

Test Differences Between Sets of Transmission Trees

validate_tree()

Validate a Transmission Tree