Tools to process the results of outbreaker2.
Installation
Install the package from CRAN:
install.packages("o2ools")
library(o2ools)Or the development version from GitHub:
devtools::install_github("cygei/o2ools")Information
The inference of transmission chains from genomic, epidemiological and contact data is central to outbreak investigations. outbreaker2 and other popular models use Bayesian inference to reconstruct who infected whom. However, the results of these models are difficult to interpret and visualise. o2ools provides tools to analyse and visualise the results of outbreaker2. To get started, check the package vignette.